Transcript: Human NM_021140.3

Homo sapiens lysine demethylase 6A (KDM6A), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
KDM6A (7403)
Length:
5785
CDS:
378..4583

Additional Resources:

NCBI RefSeq record:
NM_021140.3
NBCI Gene record:
KDM6A (7403)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107761 CCGCGCAAATAGAAATAATTT pLKO.1 1817 CDS 100% 15.000 21.000 N KDM6A n/a
2 TRCN0000359261 TGCACTTGCAGCACGAATTAA pLKO_005 1541 CDS 100% 15.000 21.000 N KDM6A n/a
3 TRCN0000359260 TGGAACAGCTCCGCGCAAATA pLKO_005 1807 CDS 100% 13.200 18.480 N KDM6A n/a
4 TRCN0000107760 GCACATAGACTAAGGAATAAA pLKO.1 5164 3UTR 100% 15.000 10.500 N KDM6A n/a
5 TRCN0000107762 GCAGCACGAATTAAGTATTTA pLKO.1 1548 CDS 100% 15.000 10.500 N KDM6A n/a
6 TRCN0000359334 TGAATCTACATCGTCAGATAA pLKO_005 3566 CDS 100% 13.200 9.240 N KDM6A n/a
7 TRCN0000107763 GATGCAAGTCTATGACCAATT pLKO.1 4526 CDS 100% 10.800 7.560 N KDM6A n/a
8 TRCN0000107764 GCATGAACACAGTTCAACTAT pLKO.1 3760 CDS 100% 5.625 3.938 N KDM6A n/a
9 TRCN0000218870 CTGGAATATGGCACGAAATAT pLKO_005 4199 CDS 100% 15.000 7.500 Y UTY n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.