Transcript: Human NM_022662.4

Homo sapiens anaphase promoting complex subunit 1 (ANAPC1), mRNA.

Source:
NCBI, updated 2019-06-08
Taxon:
Homo sapiens (human)
Gene:
ANAPC1 (64682)
Length:
7762
CDS:
277..6111

Additional Resources:

NCBI RefSeq record:
NM_022662.4
NBCI Gene record:
ANAPC1 (64682)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_022662.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163532 GCTCCAGTTACGCTGTGTAAA pLKO.1 1623 CDS 100% 13.200 18.480 N ANAPC1 n/a
2 TRCN0000330750 GCTCCAGTTACGCTGTGTAAA pLKO_005 1623 CDS 100% 13.200 18.480 N ANAPC1 n/a
3 TRCN0000163891 CCGTGCTCAGAGGATTTGAAT pLKO.1 4615 CDS 100% 5.625 4.500 N ANAPC1 n/a
4 TRCN0000330678 CATGAACATGATGGGTTATAA pLKO_005 2268 CDS 100% 15.000 10.500 N ANAPC1 n/a
5 TRCN0000330751 GACCAAACATCAAAGCTAAAG pLKO_005 6164 3UTR 100% 10.800 7.560 N ANAPC1 n/a
6 TRCN0000162224 CCAGAGAACCTTTACCTACTA pLKO.1 884 CDS 100% 4.950 3.465 N ANAPC1 n/a
7 TRCN0000330676 CCAGAGAACCTTTACCTACTA pLKO_005 884 CDS 100% 4.950 3.465 N ANAPC1 n/a
8 TRCN0000330677 TCCATGGTTAGGATCACTATT pLKO_005 2083 CDS 100% 13.200 7.920 N ANAPC1 n/a
9 TRCN0000159074 GCAAAGCTCATGTATTAACAT pLKO.1 738 CDS 100% 5.625 2.813 Y ANAPC1 n/a
10 TRCN0000167787 GCTTTGGCTATGATCTACTTA pLKO.1 4384 CDS 100% 5.625 2.813 Y LOC285074 n/a
11 TRCN0000161529 GCAGACTTGTAGTCTTGAGTA pLKO.1 2885 CDS 100% 4.950 2.475 Y ANAPC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_022662.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.