Transcript: Human NM_025170.6

Homo sapiens phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 (PREX2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
PREX2 (80243)
Length:
3936
CDS:
350..3289

Additional Resources:

NCBI RefSeq record:
NM_025170.6
NBCI Gene record:
PREX2 (80243)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_025170.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151112 GAACAGGGTGAGAAACTTTAT pLKO.1 1487 CDS 100% 13.200 18.480 N PREX2 n/a
2 TRCN0000154062 CGAATTTGTGTCATGGCTGTT pLKO.1 1588 CDS 100% 4.050 5.670 N PREX2 n/a
3 TRCN0000153208 CTCTTAGGAATATCCCAGGAT pLKO.1 3197 CDS 100% 2.640 3.696 N PREX2 n/a
4 TRCN0000153578 GAGGCAATGATATTTGGCGTT pLKO.1 1940 CDS 100% 2.160 3.024 N PREX2 n/a
5 TRCN0000156584 GCCCAAAGGTTTCTTCAGCTT pLKO.1 2872 CDS 100% 2.640 2.112 N PREX2 n/a
6 TRCN0000158317 CCCTGGACAGTGCATTATCAA pLKO.1 2491 CDS 100% 5.625 3.938 N PREX2 n/a
7 TRCN0000157338 CCAGTGTCATTGCACACGTTA pLKO.1 2547 CDS 100% 4.950 3.465 N PREX2 n/a
8 TRCN0000151514 CCTTCTCAAGAAATGCTCTTA pLKO.1 3248 CDS 100% 4.950 3.465 N PREX2 n/a
9 TRCN0000150900 GCATGAATGGTTTGAAGCTAT pLKO.1 1396 CDS 100% 4.950 3.465 N PREX2 n/a
10 TRCN0000158258 CAGACGGTTGAAGAACAGCAA pLKO.1 1186 CDS 100% 2.640 1.848 N PREX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025170.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.