Transcript: Mouse NM_025556.3

Mus musculus coordinator of PRMT5, differentiation stimulator (Coprs), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Coprs (66423)
Length:
802
CDS:
37..558

Additional Resources:

NCBI RefSeq record:
NM_025556.3
NBCI Gene record:
Coprs (66423)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025556.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000266893 ACCACAGGGAGACATGATATA pLKO_005 447 CDS 100% 13.200 18.480 N Coprs n/a
2 TRCN0000266894 CTCATACCACACTACTCCAAG pLKO_005 496 CDS 100% 4.050 5.670 N Coprs n/a
3 TRCN0000193013 GAAATCCTTACGATGCTGATG pLKO.1 377 CDS 100% 4.050 5.670 N Coprs n/a
4 TRCN0000266895 AGAGCATCCCTGCTGACATTC pLKO_005 185 CDS 100% 10.800 7.560 N Coprs n/a
5 TRCN0000266892 TCTTCGAAACAGGACAGTTTG pLKO_005 521 CDS 100% 10.800 7.560 N Coprs n/a
6 TRCN0000192196 CCTCCAGATCACAAGTTGTTT pLKO.1 599 3UTR 100% 5.625 3.938 N Coprs n/a
7 TRCN0000200629 CACAAGTTGTTTCCTGTGTTT pLKO.1 608 3UTR 100% 4.950 3.465 N Coprs n/a
8 TRCN0000266891 CCTGTGTTTCAAGTGAGATAC pLKO_005 620 3UTR 100% 10.800 6.480 N Coprs n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025556.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.