Transcript: Mouse NM_025577.2

Mus musculus RIKEN cDNA 2810428I15 gene (2810428I15Rik), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
2810428I15Rik (66462)
Length:
657
CDS:
7..516

Additional Resources:

NCBI RefSeq record:
NM_025577.2
NBCI Gene record:
2810428I15Rik (66462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025577.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328185 CACTATGACTTCCCGAGTTAC pLKO_005 193 CDS 100% 10.800 7.560 N 2810428I15Rik n/a
2 TRCN0000328186 CTACACTGGTGCAGAGGATTC pLKO_005 95 CDS 100% 6.000 4.200 N 2810428I15Rik n/a
3 TRCN0000202100 CTGCAGGAACTCAGGTTTGAT pLKO.1 478 CDS 100% 5.625 3.938 N 2810428I15Rik n/a
4 TRCN0000328121 CTGCAGGAACTCAGGTTTGAT pLKO_005 478 CDS 100% 5.625 3.938 N 2810428I15Rik n/a
5 TRCN0000328122 AGACCAAGCTCACCGTCAGTA pLKO_005 156 CDS 100% 4.950 3.465 N 2810428I15Rik n/a
6 TRCN0000189646 CAGTGGTCAGCACTATGACTT pLKO.1 183 CDS 100% 4.950 3.465 N 2810428I15Rik n/a
7 TRCN0000202032 CTCAGGTTTGATGCGGAATCT pLKO.1 487 CDS 100% 4.950 3.465 N 2810428I15Rik n/a
8 TRCN0000189824 GAGGATTCAGCAGCTTCAGAA pLKO.1 108 CDS 100% 4.950 3.465 N 2810428I15Rik n/a
9 TRCN0000328187 TGTCAGAACAGGACCCTGAAA pLKO_005 401 CDS 100% 4.950 3.465 N 2810428I15Rik n/a
10 TRCN0000190143 GTTCTGCAGGAACTCAGGTTT pLKO.1 475 CDS 100% 4.950 2.970 N 2810428I15Rik n/a
11 TRCN0000282843 ATGCGGAATCTGCCGAGTGAT pLKO_005 497 CDS 100% 4.950 3.465 N REX1BD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025577.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.