Transcript: Mouse NM_025705.4

Mus musculus discoidin, CUB and LCCL domain containing 1 (Dcbld1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Dcbld1 (66686)
Length:
3026
CDS:
133..1644

Additional Resources:

NCBI RefSeq record:
NM_025705.4
NBCI Gene record:
Dcbld1 (66686)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025705.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305766 CAGATCAGTATGGTCCATATT pLKO_005 419 CDS 100% 13.200 10.560 N Dcbld1 n/a
2 TRCN0000098324 CGACGGAATTTACCATCAGCT pLKO.1 1046 CDS 100% 2.640 2.112 N Dcbld1 n/a
3 TRCN0000098320 CCTCACTTACTGTTTACAGAA pLKO.1 1751 3UTR 100% 4.950 3.465 N Dcbld1 n/a
4 TRCN0000324631 CCTCACTTACTGTTTACAGAA pLKO_005 1751 3UTR 100% 4.950 3.465 N Dcbld1 n/a
5 TRCN0000098323 GCAGGGATCATCACAGATGAA pLKO.1 721 CDS 100% 4.950 3.465 N Dcbld1 n/a
6 TRCN0000098321 CCACTCACAAACACTCCCATT pLKO.1 1391 CDS 100% 4.050 2.835 N Dcbld1 n/a
7 TRCN0000324629 CCACTCACAAACACTCCCATT pLKO_005 1391 CDS 100% 4.050 2.835 N Dcbld1 n/a
8 TRCN0000098322 GCAGGAGATATTTCTGGGAAT pLKO.1 649 CDS 100% 4.050 2.835 N Dcbld1 n/a
9 TRCN0000324630 GCAGGAGATATTTCTGGGAAT pLKO_005 649 CDS 100% 4.050 2.835 N Dcbld1 n/a
10 TRCN0000305828 CTAGTGATATGGCAGATTATC pLKO_005 1109 CDS 100% 0.000 0.000 N Dcbld1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025705.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.