Transcript: Mouse NM_025772.4

Mus musculus dystrobrevin binding protein 1 (Dtnbp1), mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Mus musculus (mouse)
Gene:
Dtnbp1 (94245)
Length:
1311
CDS:
125..1183

Additional Resources:

NCBI RefSeq record:
NM_025772.4
NBCI Gene record:
Dtnbp1 (94245)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025772.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000215486 GAATTACTTAGCAGGTATGAG pLKO.1 272 CDS 100% 4.950 6.930 N Dtnbp1 n/a
2 TRCN0000176889 GCTGAAGACTTTAAGTGATAA pLKO.1 181 CDS 100% 13.200 9.240 N Dtnbp1 n/a
3 TRCN0000278737 GCTGAAGACTTTAAGTGATAA pLKO_005 181 CDS 100% 13.200 9.240 N Dtnbp1 n/a
4 TRCN0000197539 CACATTACACACTGACAGAAA pLKO.1 1105 CDS 100% 4.950 3.465 N Dtnbp1 n/a
5 TRCN0000278791 CACATTACACACTGACAGAAA pLKO_005 1105 CDS 100% 4.950 3.465 N Dtnbp1 n/a
6 TRCN0000198199 CCTTCAAAGCTGAACTCGATA pLKO.1 627 CDS 100% 4.950 3.465 N Dtnbp1 n/a
7 TRCN0000278790 CCTTCAAAGCTGAACTCGATA pLKO_005 627 CDS 100% 4.950 3.465 N Dtnbp1 n/a
8 TRCN0000176890 GAATGAAATGAGTCTTCAGAT pLKO.1 958 CDS 100% 4.950 3.465 N Dtnbp1 n/a
9 TRCN0000278789 GAATGAAATGAGTCTTCAGAT pLKO_005 958 CDS 100% 4.950 3.465 N Dtnbp1 n/a
10 TRCN0000198497 GCCTGGCTCATTTAGAGACAA pLKO.1 474 CDS 100% 4.950 3.465 N Dtnbp1 n/a
11 TRCN0000278738 GCCTGGCTCATTTAGAGACAA pLKO_005 474 CDS 100% 4.950 3.465 N Dtnbp1 n/a
12 TRCN0000198035 CTTGAAGCCTTCAAAGCTGAA pLKO.1 620 CDS 100% 4.050 2.835 N Dtnbp1 n/a
13 TRCN0000198730 CACCTGGAGAGCTACAAGAAA pLKO.1 584 CDS 100% 5.625 2.813 Y Dtnbp1 n/a
14 TRCN0000379485 AGATGGACCTGATGGACATAT pLKO_005 843 CDS 100% 13.200 7.920 N DTNBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025772.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.