Transcript: Mouse NM_025905.3

Mus musculus tetratricopeptide repeat domain 23 (Ttc23), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Ttc23 (67009)
Length:
2357
CDS:
457..1923

Additional Resources:

NCBI RefSeq record:
NM_025905.3
NBCI Gene record:
Ttc23 (67009)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025905.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247063 CTAGCGGAGGCGTATGTTAAT pLKO_005 712 CDS 100% 13.200 18.480 N Ttc23 n/a
2 TRCN0000257628 TGGAGCGTACGCGAAGCTAAA pLKO_005 1701 CDS 100% 10.800 15.120 N Ttc23 n/a
3 TRCN0000200799 GCACTAACAAGAATTTGCTAT pLKO.1 673 CDS 100% 4.950 3.960 N Ttc23 n/a
4 TRCN0000257751 ACGCCTCAGAGAACTTGATAA pLKO_005 920 CDS 100% 13.200 9.240 N Ttc23 n/a
5 TRCN0000257634 AGTCAAGGCAATCGGTGAAAG pLKO_005 1829 CDS 100% 10.800 7.560 N Ttc23 n/a
6 TRCN0000257618 TGATATGGTGCTCTTGGTTAT pLKO_005 2113 3UTR 100% 10.800 7.560 N Ttc23 n/a
7 TRCN0000189974 GCTGTCGTTTGCACAGTTGTA pLKO.1 1023 CDS 100% 4.950 3.465 N Ttc23 n/a
8 TRCN0000191618 GCTGTTTACTTCAGAATGCAA pLKO.1 2043 3UTR 100% 3.000 2.100 N Ttc23 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025905.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.