Transcript: Mouse NM_026140.3

Mus musculus glutamyl-tRNA synthetase 2, mitochondrial (Ears2), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Ears2 (67417)
Length:
6544
CDS:
44..1615

Additional Resources:

NCBI RefSeq record:
NM_026140.3
NBCI Gene record:
Ears2 (67417)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000204552 CAAAGGAAGTACGGGAACGAA pLKO.1 1572 CDS 100% 3.000 4.200 N Ears2 n/a
2 TRCN0000329535 CAAAGGAAGTACGGGAACGAA pLKO_005 1572 CDS 100% 3.000 4.200 N Ears2 n/a
3 TRCN0000353618 TGTTCTGGACCCTGCATATAT pLKO_005 1219 CDS 100% 15.000 10.500 N Ears2 n/a
4 TRCN0000353561 GCCTTCCAGGACCTGGTATAT pLKO_005 632 CDS 100% 13.200 9.240 N Ears2 n/a
5 TRCN0000329536 ATGACCATGAGAGCCTCTAAC pLKO_005 1641 3UTR 100% 10.800 7.560 N Ears2 n/a
6 TRCN0000187539 GAATCCAGAAGGTGCTTTCTA pLKO.1 1590 CDS 100% 5.625 3.938 N Ears2 n/a
7 TRCN0000188955 GATGACCATGAGAGCCTCTAA pLKO.1 1640 3UTR 100% 4.950 3.465 N Ears2 n/a
8 TRCN0000204789 GAACGAATCCAGAAGGTGCTT pLKO.1 1586 CDS 100% 2.640 1.848 N Ears2 n/a
9 TRCN0000329607 GAACGAATCCAGAAGGTGCTT pLKO_005 1586 CDS 100% 2.640 1.848 N Ears2 n/a
10 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 4763 3UTR 100% 4.950 2.475 Y Gad2 n/a
11 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 4704 3UTR 100% 4.050 2.025 Y Mtif2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.