Transcript: Mouse NM_028077.2

Mus musculus RIKEN cDNA 1810055G02 gene (1810055G02Rik), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
1810055G02Rik (72056)
Length:
1882
CDS:
416..1594

Additional Resources:

NCBI RefSeq record:
NM_028077.2
NBCI Gene record:
1810055G02Rik (72056)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028077.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000173164 CAAGTGGCCTAAAGCAGTAAA pLKO.1 508 CDS 100% 13.200 9.240 N 1810055G02Rik n/a
2 TRCN0000328038 CAAGTGGCCTAAAGCAGTAAA pLKO_005 508 CDS 100% 13.200 9.240 N 1810055G02Rik n/a
3 TRCN0000328042 GCCCTGATGTAGACGTCATAT pLKO_005 1188 CDS 100% 13.200 9.240 N 1810055G02Rik n/a
4 TRCN0000193919 CTATGAGAGCTACAAGAAGAA pLKO.1 1516 CDS 100% 4.950 3.465 N 1810055G02Rik n/a
5 TRCN0000328039 CTATGAGAGCTACAAGAAGAA pLKO_005 1516 CDS 100% 4.950 3.465 N 1810055G02Rik n/a
6 TRCN0000173245 CCAAACTAAGTGCTTCCAGAT pLKO.1 1645 3UTR 100% 4.050 2.835 N 1810055G02Rik n/a
7 TRCN0000328040 CCAAACTAAGTGCTTCCAGAT pLKO_005 1645 3UTR 100% 4.050 2.835 N 1810055G02Rik n/a
8 TRCN0000174424 CACATTTAATAGCTGTCAGAT pLKO.1 1704 3UTR 100% 4.950 2.970 N 1810055G02Rik n/a
9 TRCN0000328041 CACATTTAATAGCTGTCAGAT pLKO_005 1704 3UTR 100% 4.950 2.970 N 1810055G02Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028077.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.