Transcript: Mouse NM_028339.1

Mus musculus thioredoxin-related transmembrane protein 1 (Tmx1), mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Mus musculus (mouse)
Gene:
Tmx1 (72736)
Length:
2418
CDS:
16..852

Additional Resources:

NCBI RefSeq record:
NM_028339.1
NBCI Gene record:
Tmx1 (72736)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000329431 GGACTAAGTGGACGGTTTATC pLKO_005 283 CDS 100% 13.200 18.480 N Tmx1 n/a
2 TRCN0000114327 CGGTTTATCATAACTGCTCTT pLKO.1 295 CDS 100% 4.050 5.670 N Tmx1 n/a
3 TRCN0000114329 GCTGGGACTTTGTATGATATT pLKO.1 597 CDS 100% 13.200 10.560 N Tmx1 n/a
4 TRCN0000329429 GCTGGGACTTTGTATGATATT pLKO_005 597 CDS 100% 13.200 10.560 N Tmx1 n/a
5 TRCN0000114326 GCCCATTATTTCAAGACATAT pLKO.1 1257 3UTR 100% 13.200 9.240 N Tmx1 n/a
6 TRCN0000329497 GCCCATTATTTCAAGACATAT pLKO_005 1257 3UTR 100% 13.200 9.240 N Tmx1 n/a
7 TRCN0000114330 GAACCTATATCATCATGGTTT pLKO.1 421 CDS 100% 4.950 3.465 N Tmx1 n/a
8 TRCN0000114328 CCCAAGGACTAAGAAGGACTT pLKO.1 363 CDS 100% 4.050 2.835 N Tmx1 n/a
9 TRCN0000329428 CCCAAGGACTAAGAAGGACTT pLKO_005 363 CDS 100% 4.050 2.835 N Tmx1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028339.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.