Transcript: Mouse NM_028942.4

Mus musculus solute carrier organic anion transporter family, member 6c1 (Slco6c1), mRNA.

Source:
NCBI, updated 2017-04-30
Taxon:
Mus musculus (mouse)
Gene:
Slco6c1 (74441)
Length:
2433
CDS:
130..2250

Additional Resources:

NCBI RefSeq record:
NM_028942.4
NBCI Gene record:
Slco6c1 (74441)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028942.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079213 GCCGAACTGTTGTTAATAGAT pLKO.1 307 CDS 100% 5.625 7.875 N Slco6c1 n/a
2 TRCN0000079214 CCACCATTTACAAACTCAGTT pLKO.1 1317 CDS 100% 4.950 6.930 N Slco6c1 n/a
3 TRCN0000079217 CGTCAGCTATAGCTTGTATAT pLKO.1 2009 CDS 100% 13.200 10.560 N Slco6c1 n/a
4 TRCN0000079215 GCTGTTGTTGATATGACTTTA pLKO.1 463 CDS 100% 13.200 9.240 N Slco6c1 n/a
5 TRCN0000079216 GCAATTCAGATACATGATGTT pLKO.1 2155 CDS 100% 4.950 3.465 N Slco6c1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028942.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.