Transcript: Mouse NM_029091.2

Mus musculus kinesin light chain 4 (Klc4), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Klc4 (74764)
Length:
2322
CDS:
71..1930

Additional Resources:

NCBI RefSeq record:
NM_029091.2
NBCI Gene record:
Klc4 (74764)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029091.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000311182 GTACGGCAAACGCGGTAAATA pLKO_005 982 CDS 100% 15.000 21.000 N Klc4 n/a
2 TRCN0000374502 GTAGCTCGGACCAAGAATAAC pLKO_005 1202 CDS 100% 13.200 18.480 N Klc4 n/a
3 TRCN0000100810 CCAACTCAATAGGATGGTGAA pLKO.1 2004 3UTR 100% 4.050 5.670 N Klc4 n/a
4 TRCN0000100812 CGCTATTATCAGCGGGCACTA pLKO.1 1142 CDS 100% 4.050 5.670 N Klc4 n/a
5 TRCN0000302709 CGCTATTATCAGCGGGCACTA pLKO_005 1142 CDS 100% 4.050 5.670 N Klc4 n/a
6 TRCN0000100814 CGAGGCTCTGTACAAAGAGAT pLKO.1 1264 CDS 100% 4.950 3.465 N Klc4 n/a
7 TRCN0000302782 CGAGGCTCTGTACAAAGAGAT pLKO_005 1264 CDS 100% 4.950 3.465 N Klc4 n/a
8 TRCN0000100813 GAACTACTTAAACCAACCCAA pLKO.1 1843 CDS 100% 2.640 1.848 N Klc4 n/a
9 TRCN0000302783 GAACTACTTAAACCAACCCAA pLKO_005 1843 CDS 100% 2.640 1.848 N Klc4 n/a
10 TRCN0000100811 GCCACCAAAGATTCTCTGGAT pLKO.1 578 CDS 100% 2.640 1.848 N Klc4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029091.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.