Transcript: Mouse NM_029288.3

Mus musculus predicted gene 10413 (Gm10413), mRNA.

Source:
NCBI, updated 2017-05-08
Taxon:
Mus musculus (mouse)
Gene:
Gm10413 (100041774)
Length:
993
CDS:
64..678

Additional Resources:

NCBI RefSeq record:
NM_029288.3
NBCI Gene record:
Gm10413 (100041774)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029288.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000197838 GCATCCTTGTTGTCAAATATT pLKO.1 852 3UTR 100% 15.000 7.500 Y Gm5797 n/a
2 TRCN0000270541 ATGAACTAGAAGAACTGAAAT pLKO_005 254 CDS 100% 13.200 6.600 Y Gm5796 n/a
3 TRCN0000217685 GTTCTCCGAGGAACTGTTAAA pLKO.1 450 CDS 100% 13.200 6.600 Y Gm5458 n/a
4 TRCN0000198693 CAGCAATGACATGGAGGAAAT pLKO.1 291 CDS 100% 10.800 5.400 Y Gm5797 n/a
5 TRCN0000192449 CAGATGGATCTCTGCATTCTT pLKO.1 705 3UTR 100% 5.625 2.813 Y Gm5458 n/a
6 TRCN0000192499 GCAATGACATGGAGGAAATGT pLKO.1 293 CDS 100% 5.625 2.813 Y Gm5796 n/a
7 TRCN0000189839 GCAGCAGGTGTGATCATGAAA pLKO.1 666 CDS 100% 5.625 2.813 Y Gm5458 n/a
8 TRCN0000192160 CACAACATGAGAAGACAATGT pLKO.1 386 CDS 100% 4.950 2.475 Y Gm3696 n/a
9 TRCN0000178217 GAAGAGGGAATCCTTTCTCAT pLKO.1 136 CDS 100% 4.950 2.475 Y Gm10413 n/a
10 TRCN0000177971 GAGGAAGATCAGCAATGACAT pLKO.1 282 CDS 100% 4.950 2.475 Y Gm10128 n/a
11 TRCN0000177406 GAGGATATTACTGAATGAGAA pLKO.1 540 CDS 100% 4.950 2.475 Y Gm10413 n/a
12 TRCN0000191504 GATCATGAAATCCCACAGATA pLKO.1 677 CDS 100% 4.950 2.475 Y Gm5458 n/a
13 TRCN0000190046 GACATGGAGGAAATGTGTGGA pLKO.1 298 CDS 100% 2.640 1.320 Y Gm3696 n/a
14 TRCN0000189809 GATCAGCAATGACATGGAGGA pLKO.1 288 CDS 100% 2.160 1.080 Y Gm10128 n/a
15 TRCN0000177036 GAAGACAATGTTGGATATGAA pLKO.1 396 CDS 100% 5.625 2.813 Y Gm10128 n/a
16 TRCN0000177037 GATAACTATTCCTACAGCATT pLKO.1 472 CDS 100% 4.950 2.475 Y Gm10128 n/a
17 TRCN0000182095 GAGAACAGAAAGCTGCTGGTA pLKO.1 556 CDS 100% 2.640 1.320 Y Gm9732 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029288.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.