Transcript: Mouse NM_029376.2

Mus musculus spermatogenesis associated glutamate (E)-rich protein 4A (Speer4a), mRNA.

Source:
NCBI, updated 2017-04-30
Taxon:
Mus musculus (mouse)
Gene:
Speer4a (75657)
Length:
1503
CDS:
23..826

Additional Resources:

NCBI RefSeq record:
NM_029376.2
NBCI Gene record:
Speer4a (75657)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191643 GAGTTGAACCTGAGTTGTAAA pLKO.1 584 CDS 100% 13.200 7.920 N Speer4a n/a
2 TRCN0000246390 GAGTTGAACCTGAGTTGTAAA pLKO_005 584 CDS 100% 13.200 7.920 N Speer4a n/a
3 TRCN0000200832 GCTGGAGGAGAATCTTATAAA pLKO.1 487 CDS 100% 15.000 7.500 Y Speer4a n/a
4 TRCN0000246387 TGCTGGAGGAGAATCTTATAA pLKO_005 486 CDS 100% 15.000 7.500 Y Speer4a n/a
5 TRCN0000270308 CACAGGCAAACTCGACATTAT pLKO_005 329 CDS 100% 13.200 6.600 Y Gm10220 n/a
6 TRCN0000246391 CAGCCAGGGCTGTATAGTAAA pLKO_005 1280 3UTR 100% 13.200 6.600 Y Speer4a n/a
7 TRCN0000246389 CCACAGGCAAACTCGACATTA pLKO_005 328 CDS 100% 13.200 6.600 Y Speer4a n/a
8 TRCN0000176553 CCTCAGATGAATCTTCTTATA pLKO.1 783 CDS 100% 13.200 6.600 Y 5031410I06Rik n/a
9 TRCN0000270314 GAGAAGGAGATCATGACATAT pLKO_005 368 CDS 100% 13.200 6.600 Y Gm10220 n/a
10 TRCN0000246388 ATGCTGATTGGGCCATCATTC pLKO_005 549 CDS 100% 10.800 5.400 Y Speer4a n/a
11 TRCN0000179250 GAGACAAATGAGCTGAGAGAT pLKO.1 263 CDS 100% 4.950 2.475 Y Gm9758 n/a
12 TRCN0000176051 GCAGTTTGAGAAGGAAGAGAA pLKO.1 208 CDS 100% 4.950 2.475 Y Speer4d n/a
13 TRCN0000191793 GAAATTAAAGGAGAAGGAGAT pLKO.1 358 CDS 100% 4.050 2.025 Y Speer4a n/a
14 TRCN0000255101 GAGAAGGAGATCATGACATTT pLKO_005 368 CDS 100% 13.200 6.600 Y Speer4e n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.