Transcript: Mouse NM_030259.1

Mus musculus Rab interacting lysosomal protein-like 2 (Rilpl2), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Rilpl2 (80291)
Length:
1278
CDS:
151..744

Additional Resources:

NCBI RefSeq record:
NM_030259.1
NBCI Gene record:
Rilpl2 (80291)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_030259.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182554 GAAGGAGGAGAGGACCATTAT pLKO.1 684 CDS 100% 13.200 9.240 N Rilpl2 n/a
2 TRCN0000197553 CCATTATGAAGAAGCTGTTCT pLKO.1 698 CDS 100% 4.950 3.465 N Rilpl2 n/a
3 TRCN0000279272 CCATTATGAAGAAGCTGTTCT pLKO_005 698 CDS 100% 4.950 3.465 N Rilpl2 n/a
4 TRCN0000176476 CCTTGACTGATATTTGATGAA pLKO.1 1121 3UTR 100% 4.950 3.465 N Rilpl2 n/a
5 TRCN0000279339 CCTTGACTGATATTTGATGAA pLKO_005 1121 3UTR 100% 4.950 3.465 N Rilpl2 n/a
6 TRCN0000200331 GTCTACTTCCACCCAGAGAAA pLKO.1 611 CDS 100% 4.950 3.465 N Rilpl2 n/a
7 TRCN0000279305 GTCTACTTCCACCCAGAGAAA pLKO_005 611 CDS 100% 4.950 3.465 N Rilpl2 n/a
8 TRCN0000200317 GAGAGAGACAACCTCAAGCAA pLKO.1 394 CDS 100% 3.000 2.100 N Rilpl2 n/a
9 TRCN0000279273 GAGAGAGACAACCTCAAGCAA pLKO_005 394 CDS 100% 3.000 2.100 N Rilpl2 n/a
10 TRCN0000182532 GAGAAACTCCAGGAGGAAGAA pLKO.1 626 CDS 100% 4.950 2.970 N Rilpl2 n/a
11 TRCN0000200318 GTGACCCTCTTGACTTGAGAA pLKO.1 767 3UTR 100% 4.950 2.970 N Rilpl2 n/a
12 TRCN0000279271 GTGACCCTCTTGACTTGAGAA pLKO_005 767 3UTR 100% 4.950 2.970 N Rilpl2 n/a
13 TRCN0000200410 GATGGAGAGAGACAACCTCAA pLKO.1 390 CDS 100% 4.050 2.430 N Rilpl2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_030259.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.