Transcript: Human NM_032971.3

Homo sapiens protocadherin 11 Y-linked (PCDH11Y), transcript variant a, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
PCDH11Y (83259)
Length:
4794
CDS:
444..3557

Additional Resources:

NCBI RefSeq record:
NM_032971.3
NBCI Gene record:
PCDH11Y (83259)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032971.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056286 GCTGCTTAATGTTGTCACTAT pLKO.1 3149 CDS 100% 4.950 2.970 N PCDH11Y n/a
2 TRCN0000417523 GTAATCTGGCAATGGAAATTT pLKO_005 3752 3UTR 100% 15.000 7.500 Y PCDH11Y n/a
3 TRCN0000056357 CCCATCCATTGACATAAGATA pLKO.1 1562 CDS 100% 5.625 2.813 Y PCDH11X n/a
4 TRCN0000056287 CCAAGGGATGAGCATTGCTTT pLKO.1 807 CDS 100% 4.950 2.475 Y PCDH11Y n/a
5 TRCN0000056285 CCTGTCAATGACACAGTTGTT pLKO.1 1593 CDS 100% 4.950 2.475 Y PCDH11Y n/a
6 TRCN0000056283 CCTTCCAAATTCAGCCTGAAA pLKO.1 3346 CDS 100% 4.950 2.475 Y PCDH11Y n/a
7 TRCN0000073413 CGCCTGTAATTCCAGCACTTT pLKO.1 4176 3UTR 100% 4.950 2.475 Y LILRB1 n/a
8 TRCN0000056356 GCAGATGATAATGATGAAGAA pLKO.1 3092 CDS 100% 4.950 2.475 Y PCDH11X n/a
9 TRCN0000056284 GCCAGTATTCAGTAATCAGTT pLKO.1 1733 CDS 100% 4.950 2.475 Y PCDH11Y n/a
10 TRCN0000424308 GTGAGCTGAACTAGCCAAACT pLKO_005 3975 3UTR 100% 4.950 2.475 Y PCDH11Y n/a
11 TRCN0000418182 TGCAATTACTTGCCCTGTCTG pLKO_005 3914 3UTR 100% 4.050 2.025 Y PCDH11Y n/a
12 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4727 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032971.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.