Transcript: Mouse NM_053268.2

Mus musculus RAS p21 protein activator 2 (Rasa2), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Rasa2 (114713)
Length:
5699
CDS:
11..2554

Additional Resources:

NCBI RefSeq record:
NM_053268.2
NBCI Gene record:
Rasa2 (114713)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_053268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034349 GCGCGATTGTTTCTGCACTAT pLKO.1 184 CDS 100% 4.950 6.930 N Rasa2 n/a
2 TRCN0000301607 GCGCGATTGTTTCTGCACTAT pLKO_005 184 CDS 100% 4.950 6.930 N Rasa2 n/a
3 TRCN0000304370 TCCAGATGCCAACGCAATATT pLKO_005 1174 CDS 100% 15.000 10.500 N Rasa2 n/a
4 TRCN0000310898 TCGGTCAGAACTTTCCATTAA pLKO_005 2969 3UTR 100% 13.200 9.240 N Rasa2 n/a
5 TRCN0000034352 CCACAGAAAGAACCTGGTTAT pLKO.1 2369 CDS 100% 10.800 7.560 N Rasa2 n/a
6 TRCN0000034350 GCAGTCATAGTGGTAAAGAAA pLKO.1 393 CDS 100% 5.625 3.938 N Rasa2 n/a
7 TRCN0000301606 GCAGTCATAGTGGTAAAGAAA pLKO_005 393 CDS 100% 5.625 3.938 N Rasa2 n/a
8 TRCN0000034351 CCTGTGAAATAGATCCTGTTA pLKO.1 1311 CDS 100% 4.950 3.465 N Rasa2 n/a
9 TRCN0000301698 CCTGTGAAATAGATCCTGTTA pLKO_005 1311 CDS 100% 4.950 3.465 N Rasa2 n/a
10 TRCN0000034353 CGGCAGGATCTATGAAGCAAA pLKO.1 130 CDS 100% 4.950 3.465 N Rasa2 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4834 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_053268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.