Transcript: Human NM_058169.6

Homo sapiens BLOC-1 related complex subunit 5 (BORCS5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
BORCS5 (118426)
Length:
6422
CDS:
375..965

Additional Resources:

NCBI RefSeq record:
NM_058169.6
NBCI Gene record:
BORCS5 (118426)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_058169.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000172557 GCAAGAGATTCCAACCTTCCA pLKO.1 542 CDS 100% 2.640 2.112 N BORCS5 n/a
2 TRCN0000426814 GACCAGAATGCTTTGGTTAAA pLKO_005 702 CDS 100% 13.200 9.240 N BORCS5 n/a
3 TRCN0000434968 GATGGATCTGTCTGTAGAAAC pLKO_005 734 CDS 100% 10.800 7.560 N BORCS5 n/a
4 TRCN0000172436 CCTAACCAGTTCTCGGTGATA pLKO.1 1165 3UTR 100% 4.950 3.465 N BORCS5 n/a
5 TRCN0000168828 CGATATCAAGATCACCTGCAT pLKO.1 657 CDS 100% 2.640 1.848 N BORCS5 n/a
6 TRCN0000172460 CGGTGATAACTGAAGCTGGAA pLKO.1 1178 3UTR 100% 2.640 1.848 N BORCS5 n/a
7 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 4279 3UTR 100% 4.950 2.475 Y CFLAR n/a
8 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 4279 3UTR 100% 4.950 2.475 Y C19orf31 n/a
9 TRCN0000164801 CCTCCCAAAGTACTGGGATTA pLKO.1 5511 3UTR 100% 1.080 0.540 Y MAPKAPK5-AS1 n/a
10 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 4347 3UTR 100% 13.200 6.600 Y IQCC n/a
11 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 4277 3UTR 100% 4.950 2.475 Y ERN2 n/a
12 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 4277 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 4277 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_058169.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.