Transcript: Mouse NM_080853.3

Mus musculus solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 (Slc17a6), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
Slc17a6 (140919)
Length:
4338
CDS:
806..2554

Additional Resources:

NCBI RefSeq record:
NM_080853.3
NBCI Gene record:
Slc17a6 (140919)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_080853.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314082 ATGCCCGTCTACGCGATAATT pLKO_005 1733 CDS 100% 15.000 21.000 N Slc17a6 n/a
2 TRCN0000314083 CACTATGGTGGAGTCATATTT pLKO_005 2264 CDS 100% 15.000 21.000 N Slc17a6 n/a
3 TRCN0000079864 GCCCTATCATTGTTGGTGCAA pLKO.1 2184 CDS 100% 2.640 3.696 N Slc17a6 n/a
4 TRCN0000314081 CCAGATTCCAGGAGGATATAT pLKO_005 1219 CDS 100% 15.000 10.500 N Slc17a6 n/a
5 TRCN0000079863 CCGTCTTCATTCAGGCCATTT pLKO.1 2760 3UTR 100% 10.800 7.560 N Slc17a6 n/a
6 TRCN0000317809 CCGTCTTCATTCAGGCCATTT pLKO_005 2760 3UTR 100% 10.800 7.560 N Slc17a6 n/a
7 TRCN0000079865 CCTGCAAAGCATCCTACCATT pLKO.1 1607 CDS 100% 4.950 3.465 N Slc17a6 n/a
8 TRCN0000079866 CCACCAAATCTTACGGTGCTA pLKO.1 2424 CDS 100% 2.640 1.848 N Slc17a6 n/a
9 TRCN0000079867 CCCTCAATATGCTGATCCCAT pLKO.1 1296 CDS 100% 2.640 1.584 N Slc17a6 n/a
10 TRCN0000317873 CCCTCAATATGCTGATCCCAT pLKO_005 1296 CDS 100% 2.640 1.584 N Slc17a6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080853.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.