Transcript: Human NM_130847.3

Homo sapiens angiomotin like 1 (AMOTL1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
AMOTL1 (154810)
Length:
8980
CDS:
157..3027

Additional Resources:

NCBI RefSeq record:
NM_130847.3
NBCI Gene record:
AMOTL1 (154810)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_130847.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000130193 CAGGACATGGAATACACTATT pLKO.1 2401 CDS 100% 13.200 18.480 N AMOTL1 n/a
2 TRCN0000415361 GATTAGAAGACTTCATGATTT pLKO_005 1677 CDS 100% 13.200 18.480 N AMOTL1 n/a
3 TRCN0000127557 CTTCAGGGTTACTACGACAAT pLKO.1 1531 CDS 100% 4.950 6.930 N AMOTL1 n/a
4 TRCN0000433106 CACTCAAGAAGACCCACAAAT pLKO_005 588 CDS 100% 13.200 10.560 N AMOTL1 n/a
5 TRCN0000150112 CAGCAAATGGTGGAGATATTA pLKO.1 1480 CDS 100% 15.000 10.500 N AMOTL1 n/a
6 TRCN0000148659 CCAGCAAATGGTGGAGATATT pLKO.1 1479 CDS 100% 13.200 9.240 N AMOTL1 n/a
7 TRCN0000417801 CCTTGCCTCTTAGCATGTTTG pLKO_005 3407 3UTR 100% 10.800 7.560 N AMOTL1 n/a
8 TRCN0000425545 GACTGCTAACAGGCAACTATC pLKO_005 1725 CDS 100% 10.800 7.560 N AMOTL1 n/a
9 TRCN0000417370 TCCGACACTTTGCCATGAATG pLKO_005 2246 CDS 100% 10.800 7.560 N AMOTL1 n/a
10 TRCN0000146598 CATTATGCTTCCCAGAACAAA pLKO.1 1789 CDS 100% 5.625 3.938 N AMOTL1 n/a
11 TRCN0000130879 GCCCATCCTACAAACAACTTT pLKO.1 550 CDS 100% 5.625 3.938 N AMOTL1 n/a
12 TRCN0000149445 GTCAGGACATGGAATACACTA pLKO.1 2399 CDS 100% 4.950 3.465 N AMOTL1 n/a
13 TRCN0000147555 GCCATGAGAAACAAATTGGAA pLKO.1 1651 CDS 100% 3.000 2.100 N AMOTL1 n/a
14 TRCN0000128964 GAAGCAAGCATATGTTGAGAA pLKO.1 1959 CDS 100% 0.000 0.000 N AMOTL1 n/a
15 TRCN0000414010 AGAGCCTGTCTTGGCATAATG pLKO_005 3456 3UTR 100% 13.200 7.920 N AMOTL1 n/a
16 TRCN0000412405 AGGAATGATTTGAACTGATAA pLKO_005 3122 3UTR 100% 13.200 7.920 N AMOTL1 n/a
17 TRCN0000253004 CAACAGTGGACAGGCGCATAA pLKO_005 873 CDS 100% 10.800 6.480 N Amotl1 n/a
18 TRCN0000420335 CAACAGTGGACAGGCGCATAA pLKO_005 873 CDS 100% 10.800 6.480 N AMOTL1 n/a
19 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6010 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_130847.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.