Transcript: Mouse NM_133256.2

Mus musculus GS homeobox 2 (Gsx2), mRNA.

Source:
NCBI, updated 2017-06-14
Taxon:
Mus musculus (mouse)
Gene:
Gsx2 (14843)
Length:
1665
CDS:
161..1078

Additional Resources:

NCBI RefSeq record:
NM_133256.2
NBCI Gene record:
Gsx2 (14843)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_133256.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000070674 GCTAACGAAGACAAGGAGATT pLKO.1 1046 CDS 100% 4.950 3.960 N Gsx2 n/a
2 TRCN0000070675 CGAGGAACAATCACACAAGCT pLKO.1 957 CDS 100% 2.640 2.112 N Gsx2 n/a
3 TRCN0000070676 GCCGGATTTCTTCATCCCGCT pLKO.1 244 CDS 100% 0.180 0.144 N Gsx2 n/a
4 TRCN0000421622 ATCATTGAAGTTGCCATTAAT pLKO_005 1482 3UTR 100% 15.000 10.500 N Gsx2 n/a
5 TRCN0000415815 TTGAAGCTAGCTCCTCTTTAT pLKO_005 1226 3UTR 100% 13.200 9.240 N Gsx2 n/a
6 TRCN0000433717 AGGATGAGGACAGCGTTTACC pLKO_005 773 CDS 100% 4.950 3.465 N Gsx2 n/a
7 TRCN0000070677 GCGACATACCTAAACCTGTCA pLKO.1 869 CDS 100% 2.640 1.848 N Gsx2 n/a
8 TRCN0000070673 GCGAGAATTCTCTTCCAATAT pLKO.1 817 CDS 100% 0.000 0.000 N Gsx2 n/a
9 TRCN0000016433 CCGGATTTCTTCATCCCGCTT pLKO.1 245 CDS 100% 2.160 1.512 N GSX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133256.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.