Transcript: Human NM_133376.2

Homo sapiens integrin subunit beta 1 (ITGB1), transcript variant 1E, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
ITGB1 (3688)
Length:
3794
CDS:
137..2533

Additional Resources:

NCBI RefSeq record:
NM_133376.2
NBCI Gene record:
ITGB1 (3688)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_133376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000275134 TTTGTAGGAAGAGGGATAATA pLKO_005 1746 CDS 100% 15.000 10.500 N ITGB1 n/a
2 TRCN0000029645 GCCTTGCATTACTGCTGATAT pLKO.1 2367 CDS 100% 13.200 9.240 N ITGB1 n/a
3 TRCN0000275083 GCCTTGCATTACTGCTGATAT pLKO_005 2367 CDS 100% 13.200 9.240 N ITGB1 n/a
4 TRCN0000275133 TAGGTAGCTTTAGGGCAATAT pLKO_005 2594 3UTR 100% 13.200 9.240 N ITGB1 n/a
5 TRCN0000029646 CCAAATCATGTGGAGAATGTA pLKO.1 231 CDS 100% 5.625 3.938 N ITGB1 n/a
6 TRCN0000275082 CCAAATCATGTGGAGAATGTA pLKO_005 231 CDS 100% 5.625 3.938 N ITGB1 n/a
7 TRCN0000066647 GCACGATGTGATGATTTAGAA pLKO.1 320 CDS 100% 5.625 3.938 N Itgb1 n/a
8 TRCN0000311999 GCACGATGTGATGATTTAGAA pLKO_005 320 CDS 100% 5.625 3.938 N Itgb1 n/a
9 TRCN0000029648 GCCCTCCAGATGACATAGAAA pLKO.1 360 CDS 100% 5.625 3.938 N ITGB1 n/a
10 TRCN0000275135 GCCCTCCAGATGACATAGAAA pLKO_005 360 CDS 100% 5.625 3.938 N ITGB1 n/a
11 TRCN0000029644 CCTGTTTACAAGGAGCTGAAA pLKO.1 1163 CDS 100% 4.950 3.465 N ITGB1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_133376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.