Transcript: Mouse NM_134010.2

Mus musculus nucleoporin 107 (Nup107), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Nup107 (103468)
Length:
3092
CDS:
95..2875

Additional Resources:

NCBI RefSeq record:
NM_134010.2
NBCI Gene record:
Nup107 (103468)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_134010.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099711 CCGGATATTTCCTACATTCTT pLKO.1 317 CDS 100% 5.625 7.875 N Nup107 n/a
2 TRCN0000302670 CCGGATATTTCCTACATTCTT pLKO_005 317 CDS 100% 5.625 7.875 N Nup107 n/a
3 TRCN0000304923 ATCAAGAGCATTACCATATAG pLKO_005 1620 CDS 100% 13.200 9.240 N Nup107 n/a
4 TRCN0000304924 CAAGCCTCATAGCGTTCTATA pLKO_005 1854 CDS 100% 13.200 9.240 N Nup107 n/a
5 TRCN0000099714 CCCATGAAACCTTCAACGAAT pLKO.1 2364 CDS 100% 4.950 3.465 N Nup107 n/a
6 TRCN0000099710 GCTTGCTTGCTTCGTTGAGTT pLKO.1 2912 3UTR 100% 4.950 3.465 N Nup107 n/a
7 TRCN0000302671 GCTTGCTTGCTTCGTTGAGTT pLKO_005 2912 3UTR 100% 4.950 3.465 N Nup107 n/a
8 TRCN0000099713 GCCCATGAAACCTTCAACGAA pLKO.1 2363 CDS 100% 3.000 2.100 N Nup107 n/a
9 TRCN0000331556 GCCCATGAAACCTTCAACGAA pLKO_005 2363 CDS 100% 3.000 2.100 N Nup107 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_134010.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.