Transcript: Mouse NM_139270.2

Mus musculus parathyroid hormone 2 receptor (Pth2r), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Pth2r (213527)
Length:
2414
CDS:
340..1980

Additional Resources:

NCBI RefSeq record:
NM_139270.2
NBCI Gene record:
Pth2r (213527)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_139270.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437724 CTGGTATTTGGCGTGCATTAC pLKO_005 1438 CDS 100% 10.800 15.120 N Pth2r n/a
2 TRCN0000027963 GCTAACTATTCAGACTGCTTT pLKO.1 697 CDS 100% 4.950 6.930 N Pth2r n/a
3 TRCN0000418037 CTGACGGCACCATCACTATAG pLKO_005 422 CDS 100% 10.800 8.640 N Pth2r n/a
4 TRCN0000027981 CGCTGTCGTGATGTTTATTTA pLKO.1 1047 CDS 100% 15.000 10.500 N Pth2r n/a
5 TRCN0000028033 GCTCCGATCTTAGCTGCTATT pLKO.1 1288 CDS 100% 10.800 7.560 N Pth2r n/a
6 TRCN0000027945 CCGTATGTTTACGACTTCAAT pLKO.1 601 CDS 100% 5.625 3.938 N Pth2r n/a
7 TRCN0000027974 CCAGGGTTTCTTCGTGTCTAT pLKO.1 1542 CDS 100% 4.950 3.465 N Pth2r n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_139270.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.