Transcript: Human NM_145350.3

Homo sapiens scavenger receptor class F member 1 (SCARF1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-17
Taxon:
Homo sapiens (human)
Gene:
SCARF1 (8578)
Length:
3391
CDS:
36..1745

Additional Resources:

NCBI RefSeq record:
NM_145350.3
NBCI Gene record:
SCARF1 (8578)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_145350.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000369711 TGGCCGCTGCAAACACAATGA pLKO_005 830 CDS 100% 4.950 6.930 N SCARF1 n/a
2 TRCN0000056856 CCGCTCTGTCTTCCGCCATTT pLKO.1 2113 3UTR 100% 3.600 5.040 N SCARF1 n/a
3 TRCN0000369782 ATGAGGTTCCTGCCTACTGTG pLKO_005 1596 CDS 100% 4.050 3.240 N SCARF1 n/a
4 TRCN0000364888 ACCCTGATGACCTTGAATTTG pLKO_005 2485 3UTR 100% 13.200 9.240 N SCARF1 n/a
5 TRCN0000364892 TGGACCCTGTGTGCCTCATAA pLKO_005 2737 3UTR 100% 13.200 9.240 N SCARF1 n/a
6 TRCN0000364827 AGGAACCTGAGTATGAGAATG pLKO_005 2439 3UTR 100% 10.800 7.560 N SCARF1 n/a
7 TRCN0000364889 GAGGCAGAAGGATCAAGAATG pLKO_005 170 CDS 100% 10.800 7.560 N SCARF1 n/a
8 TRCN0000364828 TCGATGCAAGCCTGGATTCTT pLKO_005 260 CDS 100% 5.625 3.938 N SCARF1 n/a
9 TRCN0000056857 ACTGCTCAGTTCCTTGTGAAT pLKO.1 1213 CDS 100% 4.950 3.465 N SCARF1 n/a
10 TRCN0000056854 CCACTGATGACTCCTTCTCAT pLKO.1 1551 CDS 100% 4.950 3.465 N SCARF1 n/a
11 TRCN0000377303 CCCTGTGACCACGATCTACAT pLKO_005 2056 3UTR 100% 4.950 3.465 N SCARF1 n/a
12 TRCN0000056853 CCTGAGTATGAGAATGTTGTA pLKO.1 2444 3UTR 100% 4.950 3.465 N SCARF1 n/a
13 TRCN0000056855 TGGAGGCAGAAGGATCAAGAA pLKO.1 168 CDS 100% 4.950 3.465 N SCARF1 n/a
14 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 3029 3UTR 100% 4.950 2.475 Y n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_145350.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.