Transcript: Mouse NM_145467.2

Mus musculus integrin, beta-like 1 (Itgbl1), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Itgbl1 (223272)
Length:
2357
CDS:
170..1654

Additional Resources:

NCBI RefSeq record:
NM_145467.2
NBCI Gene record:
Itgbl1 (223272)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_145467.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094077 CAGAGCTGTTTATGATCGATA pLKO.1 997 CDS 100% 4.950 3.960 N Itgbl1 n/a
2 TRCN0000348885 AGAATTGTTCTCCCATAATTA pLKO_005 1825 3UTR 100% 15.000 10.500 N Itgbl1 n/a
3 TRCN0000145566 GCAGGTGTAAGTGTGATAATT pLKO.1 648 CDS 100% 15.000 10.500 N ITGBL1 n/a
4 TRCN0000094078 GTTCTGGAGAAGAGTGGTATA pLKO.1 1476 CDS 100% 10.800 7.560 N Itgbl1 n/a
5 TRCN0000352097 GTTCTGGAGAAGAGTGGTATA pLKO_005 1476 CDS 100% 10.800 7.560 N Itgbl1 n/a
6 TRCN0000094076 GCTGCTCCTCAAAGCTTCTTA pLKO.1 236 CDS 100% 5.625 3.938 N Itgbl1 n/a
7 TRCN0000352017 GCTGCTCCTCAAAGCTTCTTA pLKO_005 236 CDS 100% 5.625 3.938 N Itgbl1 n/a
8 TRCN0000094075 CGGAAGTGTAATATGACAGAA pLKO.1 1373 CDS 100% 4.950 3.465 N Itgbl1 n/a
9 TRCN0000352096 CGGAAGTGTAATATGACAGAA pLKO_005 1373 CDS 100% 4.950 3.465 N Itgbl1 n/a
10 TRCN0000094074 CCCATAATTAACATAGGTGTT pLKO.1 1836 3UTR 100% 4.050 2.835 N Itgbl1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_145467.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.