Transcript: Mouse NM_146474.1

Mus musculus olfactory receptor 1261 (Olfr1261), mRNA.

Source:
NCBI, updated 2013-04-17
Taxon:
Mus musculus (mouse)
Gene:
Olfr1261 (258466)
Length:
921
CDS:
1..921

Additional Resources:

NCBI RefSeq record:
NM_146474.1
NBCI Gene record:
Olfr1261 (258466)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146474.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000221003 CCCAAATATCATTGATCACTT pLKO.1 495 CDS 100% 4.950 2.970 N Olfr1261 n/a
2 TRCN0000220999 CGGGTCACTGTGTTTACTCAT pLKO.1 594 CDS 100% 4.950 2.970 N Olfr1261 n/a
3 TRCN0000221001 GCCACTCCCATGTACTTCTTT pLKO.1 151 CDS 100% 5.625 2.813 Y Olfr1261 n/a
4 TRCN0000221000 CCTTGTTCATACCTGTACCTA pLKO.1 742 CDS 100% 3.000 1.500 Y Olfr1261 n/a
5 TRCN0000221002 GCTTCCTATGTGGTCATCCTT pLKO.1 631 CDS 100% 3.000 1.500 Y Olfr1261 n/a
6 TRCN0000203876 CCACTCCCATGTACTTCTTTA pLKO.1 152 CDS 100% 13.200 6.600 Y Olfr432 n/a
7 TRCN0000030281 GCTGTAATCTTAGGATTCATT pLKO.1 427 CDS 100% 5.625 2.813 Y Olfr1263 n/a
8 TRCN0000030411 GCTGAAATCATCTTGCTGATT pLKO.1 313 CDS 100% 0.495 0.248 Y Olfr1262 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146474.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.