Transcript: Mouse NM_146680.1

Mus musculus olfactory receptor 1423 (Olfr1423), mRNA.

Source:
NCBI, updated 2012-08-25
Taxon:
Mus musculus (mouse)
Gene:
Olfr1423 (258675)
Length:
933
CDS:
1..933

Additional Resources:

NCBI RefSeq record:
NM_146680.1
NBCI Gene record:
Olfr1423 (258675)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_146680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000186749 GCCTGGTCTTATGTCTTGTTT pLKO.1 71 CDS 100% 5.625 4.500 N Olfr1423 n/a
2 TRCN0000185182 CACTACCCTATGGTTTATCTT pLKO.1 618 CDS 100% 5.625 3.938 N Olfr1423 n/a
3 TRCN0000189373 CCATCATGAGTAGTAAGCGGT pLKO.1 401 CDS 100% 0.660 0.462 N Olfr1423 n/a
4 TRCN0000188996 GTCCCACAGGTTCTCAAACTT pLKO.1 541 CDS 100% 5.625 3.375 N Olfr1423 n/a
5 TRCN0000184949 CAATGTTCTTGATACCTTCTA pLKO.1 513 CDS 100% 4.950 2.970 N Olfr1423 n/a
6 TRCN0000186727 GCTCCTGATGATCTCAAACAA pLKO.1 588 CDS 100% 5.625 2.813 Y Olfr1423 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_146680.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.