Transcript: Mouse NM_153412.4

Mus musculus pleckstrin homology like domain, family B, member 2 (Phldb2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Phldb2 (208177)
Length:
5496
CDS:
186..3935

Additional Resources:

NCBI RefSeq record:
NM_153412.4
NBCI Gene record:
Phldb2 (208177)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_153412.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105953 CCTAGTGGATAGTGACAATTA pLKO.1 1064 CDS 100% 13.200 18.480 N Phldb2 n/a
2 TRCN0000105952 CGGATCTGGATGGACGTTATA pLKO.1 3876 CDS 100% 13.200 18.480 N Phldb2 n/a
3 TRCN0000274983 GAGGATGCTCAGAGGTTATAA pLKO_005 3032 CDS 100% 15.000 12.000 N PHLDB2 n/a
4 TRCN0000274981 GACTATTCTGGCTCCTATTTA pLKO_005 345 CDS 100% 15.000 10.500 N PHLDB2 n/a
5 TRCN0000105954 GCCTAGTGGATAGTGACAATT pLKO.1 1063 CDS 100% 13.200 9.240 N Phldb2 n/a
6 TRCN0000105951 GCCCGAGGAAATACTCATCAA pLKO.1 301 CDS 100% 4.950 3.465 N Phldb2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153412.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.