Transcript: Mouse NM_172275.2

Mus musculus TRAF type zinc finger domain containing 1 (Trafd1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Trafd1 (231712)
Length:
2486
CDS:
110..1840

Additional Resources:

NCBI RefSeq record:
NM_172275.2
NBCI Gene record:
Trafd1 (231712)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172275.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182056 CACCTACTCGATGTCTCCTAA pLKO.1 1444 CDS 100% 4.950 6.930 N Trafd1 n/a
2 TRCN0000339509 CACCTACTCGATGTCTCCTAA pLKO_005 1444 CDS 100% 4.950 6.930 N Trafd1 n/a
3 TRCN0000197971 CCCAAATCTGACATGGACATT pLKO.1 248 CDS 100% 4.950 6.930 N Trafd1 n/a
4 TRCN0000181475 CGCACACTTGGACTTCATGTT pLKO.1 820 CDS 100% 4.950 6.930 N Trafd1 n/a
5 TRCN0000339508 CGCACACTTGGACTTCATGTT pLKO_005 820 CDS 100% 4.950 6.930 N Trafd1 n/a
6 TRCN0000339582 CTTGAGTGTGCAGCGTGTTAC pLKO_005 2226 3UTR 100% 10.800 8.640 N Trafd1 n/a
7 TRCN0000197997 CATGCCTTACGTTCACTCAAT pLKO.1 1055 CDS 100% 4.950 3.465 N Trafd1 n/a
8 TRCN0000339580 CATGCCTTACGTTCACTCAAT pLKO_005 1055 CDS 100% 4.950 3.465 N Trafd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172275.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.