Transcript: Mouse NM_173027.2

Mus musculus inositol hexaphosphate kinase 3 (Ip6k3), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Ip6k3 (271424)
Length:
2305
CDS:
204..1394

Additional Resources:

NCBI RefSeq record:
NM_173027.2
NBCI Gene record:
Ip6k3 (271424)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_173027.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430960 AGCTAGGGTAGTCTAGATTTC pLKO_005 1454 3UTR 100% 10.800 15.120 N Ip6k3 n/a
2 TRCN0000430024 CATTGGGATTCTGCGGGATAT pLKO_005 1358 CDS 100% 10.800 15.120 N Ip6k3 n/a
3 TRCN0000430918 GCTCCGTCCTCATAATCTATG pLKO_005 1159 CDS 100% 10.800 15.120 N Ip6k3 n/a
4 TRCN0000071407 CTTCGCTCACACGACATTCAA pLKO.1 1268 CDS 100% 5.625 7.875 N Ip6k3 n/a
5 TRCN0000071405 GACCAGATCCTGGCTATATTT pLKO.1 1321 CDS 100% 15.000 10.500 N Ip6k3 n/a
6 TRCN0000431269 GTGGAGAGAAAGGGCTTTAAC pLKO_005 684 CDS 100% 13.200 9.240 N Ip6k3 n/a
7 TRCN0000414695 GTGTCTTTGTAATAACCATAT pLKO_005 1483 3UTR 100% 10.800 7.560 N Ip6k3 n/a
8 TRCN0000071403 CCAGAGTTCTTACCGCTTCTA pLKO.1 1133 CDS 100% 4.950 3.465 N Ip6k3 n/a
9 TRCN0000071404 GAAGTGCTTCACTCCGAAGTA pLKO.1 377 CDS 100% 4.950 3.465 N Ip6k3 n/a
10 TRCN0000071406 CTCTGCAAAGATAAGTACTAT pLKO.1 981 CDS 100% 5.625 3.375 N Ip6k3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_173027.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.