Transcript: Mouse NM_175641.2

Mus musculus latent transforming growth factor beta binding protein 4 (Ltbp4), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-07
Taxon:
Mus musculus (mouse)
Gene:
Ltbp4 (108075)
Length:
5322
CDS:
46..5046

Additional Resources:

NCBI RefSeq record:
NM_175641.2
NBCI Gene record:
Ltbp4 (108075)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175641.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314014 GCCTTACCCGCTCCGTTTATA pLKO_005 629 CDS 100% 15.000 21.000 N Ltbp4 n/a
2 TRCN0000065789 CGCTGCCCATTCTTCGAAATA pLKO.1 1298 CDS 100% 13.200 18.480 N Ltbp4 n/a
3 TRCN0000350007 GCGCCAAATCTCCCACTATAC pLKO_005 5053 3UTR 100% 10.800 15.120 N Ltbp4 n/a
4 TRCN0000313942 TCGCTGCCCATTCTTCGAAAT pLKO_005 1297 CDS 100% 10.800 15.120 N Ltbp4 n/a
5 TRCN0000065792 CCGGGTCCTATGTCCCTTGAT pLKO.1 489 CDS 100% 1.650 2.310 N Ltbp4 n/a
6 TRCN0000314013 CAGGCTGGAGTGCGTTGATAA pLKO_005 4041 CDS 100% 13.200 9.240 N Ltbp4 n/a
7 TRCN0000065790 GATGTACTGATGTGGATGAAT pLKO.1 2666 CDS 100% 5.625 3.938 N Ltbp4 n/a
8 TRCN0000317524 GATGTACTGATGTGGATGAAT pLKO_005 2666 CDS 100% 5.625 3.938 N Ltbp4 n/a
9 TRCN0000065788 CCTATGAATATGGCCCAGATA pLKO.1 4433 CDS 100% 4.950 3.465 N Ltbp4 n/a
10 TRCN0000065791 CAGATGACTTTGAGGCCCTTT pLKO.1 4355 CDS 100% 4.050 2.835 N Ltbp4 n/a
11 TRCN0000055832 TGTCCCTTGATCTGTCACAAT pLKO.1 499 CDS 100% 4.950 6.930 N LTBP4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175641.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.