Transcript: Mouse NM_177588.2

Mus musculus threonine synthase-like 1 (bacterial) (Thnsl1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Thnsl1 (208967)
Length:
3899
CDS:
327..2570

Additional Resources:

NCBI RefSeq record:
NM_177588.2
NBCI Gene record:
Thnsl1 (208967)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177588.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423180 ACTACTTCCGCAGATAGTTTA pLKO_005 1751 CDS 100% 13.200 18.480 N Thnsl1 n/a
2 TRCN0000075911 GCACGTAAGACTGTACTATAA pLKO.1 887 CDS 100% 13.200 18.480 N Thnsl1 n/a
3 TRCN0000075910 CGTAAGACTGTACTATAAGAA pLKO.1 890 CDS 100% 5.625 7.875 N Thnsl1 n/a
4 TRCN0000075909 GCCTCTAATCAGAACCACGTT pLKO.1 1923 CDS 100% 2.640 3.696 N Thnsl1 n/a
5 TRCN0000075908 GCTAACAAAGACGGACAGTTA pLKO.1 2064 CDS 100% 4.950 3.960 N Thnsl1 n/a
6 TRCN0000427805 ACAATGCATCAGGCTATATTT pLKO_005 2221 CDS 100% 15.000 10.500 N Thnsl1 n/a
7 TRCN0000230782 TACAGCTTATGCCTCATATTT pLKO_005 1390 CDS 100% 15.000 10.500 N THNSL1 n/a
8 TRCN0000420517 GTGCTGCATATCTAGTCATTT pLKO_005 2837 3UTR 100% 13.200 9.240 N Thnsl1 n/a
9 TRCN0000429573 TGGAATATGGAACAATCTTAA pLKO_005 1702 CDS 100% 13.200 9.240 N Thnsl1 n/a
10 TRCN0000075912 GACGGACAGTTAATGGCAAAT pLKO.1 2073 CDS 100% 10.800 7.560 N Thnsl1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177588.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.