Transcript: Mouse NM_177751.3

Mus musculus connector enhancer of kinase suppressor of Ras 2 (Cnksr2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Cnksr2 (245684)
Length:
5521
CDS:
358..3456

Additional Resources:

NCBI RefSeq record:
NM_177751.3
NBCI Gene record:
Cnksr2 (245684)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_177751.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000025050 GCATCCCTATACTGGTATATT pLKO.1 2158 CDS 100% 15.000 21.000 N Cnksr2 n/a
2 TRCN0000362681 TCCTCCTGCAGAACCATATAT pLKO_005 1422 CDS 100% 15.000 21.000 N Cnksr2 n/a
3 TRCN0000025053 CCTATATCTATGCCAGTGGAA pLKO.1 1672 CDS 100% 2.640 3.696 N Cnksr2 n/a
4 TRCN0000025051 GCCATTATTGATAAAGTCCTA pLKO.1 3259 CDS 100% 2.640 3.696 N Cnksr2 n/a
5 TRCN0000362680 AGAATATCGAAAGAGGTTTAA pLKO_005 1548 CDS 100% 13.200 9.240 N Cnksr2 n/a
6 TRCN0000362682 ATGAAACTTCAACCGTAAATC pLKO_005 3810 3UTR 100% 13.200 9.240 N Cnksr2 n/a
7 TRCN0000025052 GCAACAGGATTGCACTGTATA pLKO.1 870 CDS 100% 13.200 9.240 N Cnksr2 n/a
8 TRCN0000025049 CCACTAAGTATCTCTTCTGAA pLKO.1 3376 CDS 100% 4.950 3.465 N Cnksr2 n/a
9 TRCN0000413041 AGGAAGAAGAGGAGGAGGAAG pLKO_005 2987 CDS 100% 4.050 2.025 Y Myt1 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4295 3UTR 100% 4.950 2.475 Y KAAG1 n/a
11 TRCN0000138934 GAAGAGGAGGAGGAAGAAGAA pLKO.1 2992 CDS 100% 4.950 2.475 Y PTMA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_177751.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.