Transcript: Mouse NM_178644.3

Mus musculus out at first homolog (Oaf), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Oaf (102644)
Length:
2388
CDS:
244..1092

Additional Resources:

NCBI RefSeq record:
NM_178644.3
NBCI Gene record:
Oaf (102644)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178644.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179381 GCATTAGAACAGGCGGAATTA pLKO.1 862 CDS 100% 13.200 18.480 N Oaf n/a
2 TRCN0000248211 CACCTGTAACATCAACATAAT pLKO_005 2029 3UTR 100% 13.200 10.560 N Oaf n/a
3 TRCN0000248209 ACCCATGCATGCTCAAGTATT pLKO_005 953 CDS 100% 13.200 9.240 N Oaf n/a
4 TRCN0000257693 GGGTCTGGAACAGTTACATAT pLKO_005 684 CDS 100% 13.200 9.240 N Oaf n/a
5 TRCN0000248210 CATCTCCTTCATCGCGGATTT pLKO_005 483 CDS 100% 10.800 7.560 N Oaf n/a
6 TRCN0000217944 GCTACACCTTTGACTTCTATG pLKO.1 1031 CDS 100% 10.800 7.560 N Oaf n/a
7 TRCN0000248208 TCACAAGGCTGCACCACAATG pLKO_005 587 CDS 100% 10.800 7.560 N Oaf n/a
8 TRCN0000116031 CCTACAAGTGTGGCATCCGCA pLKO.1 998 CDS 100% 0.220 0.132 N OAF n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178644.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.