Transcript: Mouse NM_178659.6

Mus musculus jumonji domain containing 4 (Jmjd4), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Jmjd4 (194952)
Length:
4445
CDS:
201..1484

Additional Resources:

NCBI RefSeq record:
NM_178659.6
NBCI Gene record:
Jmjd4 (194952)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178659.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219635 GGCTAGAGGCACAGTACTAAA pLKO.1 2208 3UTR 100% 13.200 18.480 N Jmjd4 n/a
2 TRCN0000193505 GAGTGCGAGAATACAATTCAA pLKO.1 499 CDS 100% 5.625 7.875 N Jmjd4 n/a
3 TRCN0000175085 GCCACAATTTGAAAGTTGTTT pLKO.1 3579 3UTR 100% 5.625 4.500 N Jmjd4 n/a
4 TRCN0000219634 CATGTCCTTCCGCGACTATAT pLKO.1 533 CDS 100% 13.200 9.240 N Jmjd4 n/a
5 TRCN0000174744 GAATGACTTGGAAGACATATT pLKO.1 647 CDS 100% 13.200 9.240 N Jmjd4 n/a
6 TRCN0000173652 CATGGTAACCTGCCCTATGAT pLKO.1 882 CDS 100% 5.625 3.938 N Jmjd4 n/a
7 TRCN0000193962 GAGTATCTGCAGCAGAAGTAT pLKO.1 447 CDS 100% 5.625 3.938 N Jmjd4 n/a
8 TRCN0000193504 GCTGAATTTGTGAACATCTTT pLKO.1 2644 3UTR 100% 5.625 3.938 N Jmjd4 n/a
9 TRCN0000193424 CAATGTGGATGACTATCGTTT pLKO.1 722 CDS 100% 4.950 3.465 N Jmjd4 n/a
10 TRCN0000193447 GCCAAGAATGTGAATTGAGTA pLKO.1 1710 3UTR 100% 4.950 3.465 N Jmjd4 n/a
11 TRCN0000193974 GTCCTCAATGTGGATGACTAT pLKO.1 717 CDS 100% 4.950 3.465 N Jmjd4 n/a
12 TRCN0000082018 CCATCTGTAATGGGATCCTAT pLKO.1 4257 3UTR 100% 4.950 2.475 Y Zfp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178659.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.