Transcript: Mouse NM_178920.4

Mus musculus mal, T cell differentiation protein 2 (Mal2), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Mal2 (105853)
Length:
2775
CDS:
144..671

Additional Resources:

NCBI RefSeq record:
NM_178920.4
NBCI Gene record:
Mal2 (105853)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178920.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000100651 GTCTTCTACTTCGGAGCGTTT pLKO.1 471 CDS 100% 4.050 5.670 N Mal2 n/a
2 TRCN0000325454 GTCTTCTACTTCGGAGCGTTT pLKO_005 471 CDS 100% 4.050 5.670 N Mal2 n/a
3 TRCN0000100652 CGACAACCAGTATAACATCAA pLKO.1 566 CDS 100% 4.950 3.960 N Mal2 n/a
4 TRCN0000325389 CGACAACCAGTATAACATCAA pLKO_005 566 CDS 100% 4.950 3.960 N Mal2 n/a
5 TRCN0000100654 CAACGACAACCAGTATAACAT pLKO.1 563 CDS 100% 5.625 3.938 N Mal2 n/a
6 TRCN0000100650 GCTGAATTTGAGTAACAGATT pLKO.1 1737 3UTR 100% 4.950 3.465 N Mal2 n/a
7 TRCN0000325388 GCTGAATTTGAGTAACAGATT pLKO_005 1737 3UTR 100% 4.950 3.465 N Mal2 n/a
8 TRCN0000100653 CAGCTTGTTATGGTTGCAGTT pLKO.1 619 CDS 100% 4.050 2.835 N Mal2 n/a
9 TRCN0000325452 CAGCTTGTTATGGTTGCAGTT pLKO_005 619 CDS 100% 4.050 2.835 N Mal2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178920.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.