Transcript: Human NM_182909.3

Homo sapiens filamin A interacting protein 1 like (FILIP1L), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
FILIP1L (11259)
Length:
3970
CDS:
472..3879

Additional Resources:

NCBI RefSeq record:
NM_182909.3
NBCI Gene record:
FILIP1L (11259)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_182909.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136993 CCATTGAAAGTCGGCTAGAAA pLKO.1 1892 CDS 100% 5.625 7.875 N FILIP1L n/a
2 TRCN0000431196 CAGTGCCAAGCATGCGATATT pLKO_005 3546 CDS 100% 13.200 10.560 N FILIP1L n/a
3 TRCN0000136171 GCAATAGCTCAAGTGTGATAA pLKO.1 3617 CDS 100% 13.200 10.560 N FILIP1L n/a
4 TRCN0000136305 GCTAAGTACAAGTTAGCAGAA pLKO.1 2524 CDS 100% 0.405 0.324 N FILIP1L n/a
5 TRCN0000346916 TGATAACTACTGAGGATAATA pLKO_005 3632 CDS 100% 15.000 10.500 N Filip1l n/a
6 TRCN0000426994 ATGGCAACTGAAGACCTAATA pLKO_005 2659 CDS 100% 13.200 9.240 N FILIP1L n/a
7 TRCN0000137442 GCAGTCATCAATGGTCAGTTA pLKO.1 2932 CDS 100% 4.950 3.465 N FILIP1L n/a
8 TRCN0000136529 CCAATAAAGTCACCAGCAGTA pLKO.1 3782 CDS 100% 4.050 2.835 N FILIP1L n/a
9 TRCN0000136191 GCTTCAATCATTGGAAGCAAT pLKO.1 2244 CDS 100% 0.495 0.347 N FILIP1L n/a
10 TRCN0000172440 CACACACACACACACAGACAA pLKO.1 4 5UTR 100% 4.950 2.475 Y LINC00955 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_182909.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02661 pDONR223 100% 78.2% 78.2% None (many diffs) n/a
2 ccsbBroad304_02661 pLX_304 0% 78.2% 78.2% V5 (many diffs) n/a
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