Transcript: Mouse NM_183298.1

Mus musculus forkhead box E1 (Foxe1), mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Foxe1 (110805)
Length:
1116
CDS:
1..1116

Additional Resources:

NCBI RefSeq record:
NM_183298.1
NBCI Gene record:
Foxe1 (110805)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_183298.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086575 TGCCGGGTCTTCGGCTTGGTT pLKO.1 649 CDS 100% 0.000 0.000 N Foxe1 n/a
2 TRCN0000086576 AGGAGCGAGCAGTGCGCTCTT pLKO.1 858 CDS 100% 0.000 0.000 N Foxe1 n/a
3 TRCN0000086573 CCGGCCTACATGCACGATGCA pLKO.1 478 CDS 100% 0.000 0.000 N Foxe1 n/a
4 TRCN0000412244 TACATCGCGCTCATCGCTATG pLKO_005 178 CDS 100% 6.000 4.200 N Foxe1 n/a
5 TRCN0000418023 ACGCCGAGGACATGTTCGAAA pLKO_005 401 CDS 100% 4.950 3.465 N Foxe1 n/a
6 TRCN0000015471 CATCTACAAGTTCATCACCGA pLKO.1 240 CDS 100% 0.660 0.462 N FOXE1 n/a
7 TRCN0000086577 CGTGGAGGCCACGGTGGACTT pLKO.1 942 CDS 100% 0.000 0.000 N Foxe1 n/a
8 TRCN0000086574 CTTCCCGTTCTACCGCGACAA pLKO.1 264 CDS 100% 1.350 0.810 N Foxe1 n/a
9 TRCN0000419055 ACAACCTCACCCTCAACGACT pLKO_005 314 CDS 100% 2.640 1.320 Y Foxe1 n/a
10 TRCN0000017867 GCAGAACAGCATCCGCCACAA pLKO.1 297 CDS 100% 1.350 0.675 Y FOXD4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_183298.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.