Transcript: Mouse NM_198004.3

Mus musculus idnK gluconokinase homolog (E. coli) (Idnk), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Idnk (75731)
Length:
1511
CDS:
39..593

Additional Resources:

NCBI RefSeq record:
NM_198004.3
NBCI Gene record:
Idnk (75731)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_198004.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263408 GGCTCGTTTGACATCATTTAT pLKO_005 411 CDS 100% 15.000 21.000 N Idnk n/a
2 TRCN0000202212 CTTTGCACCTTGCACGACATT pLKO.1 222 CDS 100% 4.950 6.930 N Idnk n/a
3 TRCN0000282608 ATTCTATGATGCCGATGATTA pLKO_005 131 CDS 100% 13.200 10.560 N Idnk n/a
4 TRCN0000192087 CGAGGAGAATCGGATAAAGAT pLKO.1 158 CDS 100% 5.625 4.500 N Idnk n/a
5 TRCN0000282610 CATCGGGCTGTACTGTAAATT pLKO_005 766 3UTR 100% 15.000 10.500 N Idnk n/a
6 TRCN0000263406 TTTGCACCTTGCACGACATTT pLKO_005 223 CDS 100% 13.200 9.240 N Idnk n/a
7 TRCN0000263407 ATCGGATAAAGATGGCGAAAG pLKO_005 166 CDS 100% 6.000 4.200 N Idnk n/a
8 TRCN0000189864 GATTACCACTCCGAGGAGAAT pLKO.1 147 CDS 100% 4.950 3.465 N Idnk n/a
9 TRCN0000120127 CCTGAGTTCAAATCCCAGCAA pLKO.1 965 3UTR 100% 2.640 1.320 Y Adsl n/a
10 TRCN0000339691 CCTGAGTTCAAATCCCAGCAA pLKO_005 965 3UTR 100% 2.640 1.320 Y Adsl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198004.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.