Transcript: Mouse NM_198168.3

Mus musculus protein phosphatase 2, regulatory subunit B', beta (Ppp2r5b), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Ppp2r5b (225849)
Length:
2708
CDS:
598..2091

Additional Resources:

NCBI RefSeq record:
NM_198168.3
NBCI Gene record:
Ppp2r5b (225849)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_198168.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000340538 CATCCGCATGATATCAGTAAA pLKO_005 984 CDS 100% 13.200 18.480 N Ppp2r5b n/a
2 TRCN0000352447 ACTGTGCTGCCTGCGGTATTT pLKO_005 1783 CDS 100% 13.200 9.240 N Ppp2r5b n/a
3 TRCN0000340475 CCACATCTGCAGCTGGTATAT pLKO_005 1084 CDS 100% 13.200 9.240 N Ppp2r5b n/a
4 TRCN0000351064 ACGAGCTGGAACACTTCAATG pLKO_005 1328 CDS 100% 10.800 7.560 N Ppp2r5b n/a
5 TRCN0000340540 GACTAGACCAGGGCAAGTATG pLKO_005 2312 3UTR 100% 10.800 7.560 N Ppp2r5b n/a
6 TRCN0000080991 GCTCTGTATTTCTGGAACAAT pLKO.1 1726 CDS 100% 5.625 3.938 N Ppp2r5b n/a
7 TRCN0000080990 GCCAAGAGATACGTGGATCAA pLKO.1 1153 CDS 100% 4.950 3.465 N Ppp2r5b n/a
8 TRCN0000080992 CCTGATCTACAACGTGCTCAA pLKO.1 1854 CDS 100% 4.050 2.835 N Ppp2r5b n/a
9 TRCN0000080988 GAGATGCTAAACCCAGAGCTA pLKO.1 2107 3UTR 100% 2.640 1.848 N Ppp2r5b n/a
10 TRCN0000080989 CCAGACATCATCCGCATGATA pLKO.1 976 CDS 100% 0.563 0.394 N Ppp2r5b n/a
11 TRCN0000380942 TCTTCCTCCGGTTCATCTATG pLKO_005 1310 CDS 100% 10.800 7.560 N PPP2R5B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198168.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.