Transcript: Human NR_003291.1

Homo sapiens ankyrin repeat domain 18D, pseudogene (ANKRD18DP), non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
ANKRD18DP (348840)
Length:
2925
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003291.1
NBCI Gene record:
ANKRD18DP (348840)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_003291.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156345 CAGGAAGAGACGTGTTCCATT pLKO.1 484 3UTR 100% 4.950 3.465 N ANKRD18DP n/a
2 TRCN0000157233 GAAGGCTGTATATTGCCAGGA pLKO.1 468 3UTR 100% 2.160 1.512 N ANKRD18DP n/a
3 TRCN0000156986 CAGACTAAACAGGACGCCTTT pLKO.1 444 3UTR 100% 4.050 2.430 N ANKRD18DP n/a
4 TRCN0000151240 GCCTTTAATGAAGGCTGTATA pLKO.1 459 3UTR 100% 1.320 0.792 N ANKRD18DP n/a
5 TRCN0000157785 CAGATCGACATCTGTGACAGA pLKO.1 427 3UTR 100% 0.264 0.132 Y ANKRD18DP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003291.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.