Transcript: Human NR_046227.1

Homo sapiens CPB2 antisense RNA 1 (CPB2-AS1), transcript variant 2, long non-coding RNA.

Source:
NCBI, updated 2018-05-24
Taxon:
Homo sapiens (human)
Gene:
CPB2-AS1 (100509894)
Length:
3218
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046227.1
NBCI Gene record:
CPB2-AS1 (100509894)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046227.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1633 3UTR 100% 4.950 2.475 Y ERAP2 n/a
2 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 1701 3UTR 100% 13.200 6.600 Y IQCC n/a
3 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1634 3UTR 100% 13.200 6.600 Y LIAS n/a
4 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 1708 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046227.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.