Transcript: Human NR_073519.2

Homo sapiens VPS51 subunit of GARP complex (VPS51), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
VPS51 (738)
Length:
2663
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_073519.2
NBCI Gene record:
VPS51 (738)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_073519.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156352 CCCGGAAGTTTACCTAGACAA pLKO.1 244 3UTR 100% 4.950 6.930 N VPS51 n/a
2 TRCN0000156488 CCTGGTCATATCACAGATGCT pLKO.1 1791 3UTR 100% 2.640 2.112 N VPS51 n/a
3 TRCN0000347382 CACGGGATGCTGAAGCTTTAC pLKO_005 137 3UTR 100% 10.800 7.560 N Vps51 n/a
4 TRCN0000154172 CCGGAAGATGAAGAACGATTT pLKO.1 403 3UTR 100% 10.800 7.560 N VPS51 n/a
5 TRCN0000343614 CCGGAAGATGAAGAACGATTT pLKO_005 403 3UTR 100% 10.800 7.560 N VPS51 n/a
6 TRCN0000156252 CGGGATGCTGAAGCTTTACTA pLKO.1 139 3UTR 100% 5.625 3.938 N VPS51 n/a
7 TRCN0000154002 CACTCTCACTGATGAACAGTT pLKO.1 1668 3UTR 100% 4.950 3.465 N VPS51 n/a
8 TRCN0000152690 GAAGAACGATTTCCGGAAGAT pLKO.1 412 3UTR 100% 4.950 3.465 N VPS51 n/a
9 TRCN0000151062 GAAGCTATTCTCTGAACGTAT pLKO.1 2076 3UTR 100% 4.950 3.465 N VPS51 n/a
10 TRCN0000352888 GAAGCTATTCTCTGAACGTAT pLKO_005 2076 3UTR 100% 4.950 3.465 N VPS51 n/a
11 TRCN0000156382 CAAGAGGACTTTCTCCGTGTA pLKO.1 1971 3UTR 100% 4.050 2.835 N VPS51 n/a
12 TRCN0000343615 CAAGAGGACTTTCTCCGTGTA pLKO_005 1971 3UTR 100% 4.050 2.835 N VPS51 n/a
13 TRCN0000157729 CAAAGAGGTGTCCTTCTCCAA pLKO.1 1446 3UTR 100% 2.640 1.848 N VPS51 n/a
14 TRCN0000157603 GAACAGTTTCTGGTGCAGGAT pLKO.1 1681 3UTR 100% 2.640 1.848 N VPS51 n/a
15 TRCN0000156899 GTGTTAGAGTTCACCGACCAT pLKO.1 937 3UTR 100% 2.640 1.848 N VPS51 n/a
16 TRCN0000343672 GTGTTAGAGTTCACCGACCAT pLKO_005 937 3UTR 100% 2.640 1.848 N VPS51 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_073519.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.