Transcript: Human NR_104109.2

Homo sapiens ATPase copper transporting alpha (ATP7A), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-25
Taxon:
Homo sapiens (human)
Gene:
ATP7A (538)
Length:
5501
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104109.2
NBCI Gene record:
ATP7A (538)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104109.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432937 AGTCAAGAGGATTCGGATAAA pLKO_005 1226 3UTR 100% 13.200 18.480 N ATP7A n/a
2 TRCN0000043174 GCTGTATTAGTAGCAGTTGAT pLKO.1 810 3UTR 100% 4.950 6.930 N ATP7A n/a
3 TRCN0000434639 TGAATGGTGTGCATCACATTA pLKO_005 262 3UTR 100% 13.200 9.240 N ATP7A n/a
4 TRCN0000418612 TGGAGAGTGCTGCCAGTTTAA pLKO_005 1684 3UTR 100% 13.200 9.240 N ATP7A n/a
5 TRCN0000426869 TTCTATTTGAGTTGCGTTTAT pLKO_005 1794 3UTR 100% 13.200 9.240 N ATP7A n/a
6 TRCN0000043176 GCTCCCTAAACAGTGTTGTTA pLKO.1 1588 3UTR 100% 5.625 3.938 N ATP7A n/a
7 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2934 3UTR 100% 5.625 2.813 Y KLHL30 n/a
8 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2934 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104109.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.