Transcript: Mouse NR_104438.1

Mus musculus calmin (Clmn), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Clmn (94040)
Length:
12114
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104438.1
NBCI Gene record:
Clmn (94040)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_104438.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000436887 GCATCGATGCAGCGGAAATAG pLKO_005 463 3UTR 100% 13.200 18.480 N Clmn n/a
2 TRCN0000435983 GCGAAATCTGCTGCATGAATA pLKO_005 356 3UTR 100% 13.200 18.480 N Clmn n/a
3 TRCN0000435559 ACGACTCTCTGACGCAGTTTG pLKO_005 3305 3UTR 100% 10.800 15.120 N Clmn n/a
4 TRCN0000091740 CGGTTGAACAACATAGCGAAA pLKO.1 402 3UTR 100% 4.050 5.670 N Clmn n/a
5 TRCN0000091739 CCACGTAGAAAGCTCATTATT pLKO.1 2795 3UTR 100% 15.000 10.500 N Clmn n/a
6 TRCN0000091741 CGAAGAAGGTTTGGATTTCAA pLKO.1 2270 3UTR 100% 5.625 3.938 N Clmn n/a
7 TRCN0000091742 CGGGCTGATATGGAACATCAT pLKO.1 509 3UTR 100% 4.950 3.465 N Clmn n/a
8 TRCN0000091738 GCGACACACTAATAGGTCTTT pLKO.1 3002 3UTR 100% 4.950 3.465 N Clmn n/a
9 TRCN0000425422 GACTTTCACACGATGGATAAA pLKO_005 233 3UTR 100% 13.200 7.920 N Clmn n/a
10 TRCN0000112810 GCCTGGTCTATAAAGTGAGTT pLKO.1 4714 3UTR 100% 4.950 2.475 Y Rhag n/a
11 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 4655 3UTR 100% 4.050 2.025 Y Mtif2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104438.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.