Transcript: Mouse NR_110979.1

Mus musculus protein phosphatase 1, regulatory (inhibitor) subunit 1C (Ppp1r1c), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2014-07-04
Taxon:
Mus musculus (mouse)
Gene:
Ppp1r1c (75276)
Length:
3799
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_110979.1
NBCI Gene record:
Ppp1r1c (75276)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_110979.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105652 CCTTTATTCCAGAGTCAGATT pLKO.1 434 3UTR 100% 4.950 3.465 N Ppp1r1c n/a
2 TRCN0000105651 GCATCCCTTGTGATTCTCAAT pLKO.1 495 3UTR 100% 4.950 3.465 N Ppp1r1c n/a
3 TRCN0000052717 CCTAAGCAAAGGAAGCAGAGT pLKO.1 582 3UTR 100% 2.640 1.848 N PPP1R1C n/a
4 TRCN0000105653 TCCCTTGTGATTCTCAATGAA pLKO.1 498 3UTR 100% 5.625 3.375 N Ppp1r1c n/a
5 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2675 3UTR 100% 4.950 2.475 Y KAAG1 n/a
6 TRCN0000120127 CCTGAGTTCAAATCCCAGCAA pLKO.1 2449 3UTR 100% 2.640 1.320 Y Adsl n/a
7 TRCN0000339691 CCTGAGTTCAAATCCCAGCAA pLKO_005 2449 3UTR 100% 2.640 1.320 Y Adsl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_110979.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.