Transcript: Human NR_111932.2

Homo sapiens kinesin family member 5C (KIF5C), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
KIF5C (3800)
Length:
6142
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_111932.2
NBCI Gene record:
KIF5C (3800)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_111932.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245800 CTCTTATTGCTCAACGATAAA pLKO_005 1680 3UTR 100% 13.200 18.480 N KIF5C n/a
2 TRCN0000245801 GATCTGACCACCCGAGTTAAA pLKO_005 1794 3UTR 100% 13.200 18.480 N KIF5C n/a
3 TRCN0000245798 TCCAGACTCCGAGACGAAATT pLKO_005 1527 3UTR 100% 13.200 18.480 N KIF5C n/a
4 TRCN0000245799 TATACCTGCTCTACCATTATT pLKO_005 4201 3UTR 100% 15.000 10.500 N KIF5C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_111932.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13887 pDONR223 100% 35.3% None 1_68del;1389G>T;2244_6142del n/a
2 ccsbBroad304_13887 pLX_304 0% 35.3% V5 1_68del;1389G>T;2244_6142del n/a
3 TRCN0000477266 TAGACTGAGATACTATTTATCGAA pLX_317 14.1% 35.3% V5 1_68del;1389G>T;2244_6142del n/a
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