Transcript: Human NR_131765.2

Homo sapiens TOG array regulator of axonemal microtubules 1 (TOGARAM1), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
TOGARAM1 (23116)
Length:
6255
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_131765.2
NBCI Gene record:
TOGARAM1 (23116)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_131765.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346876 AGACTTTCGTGATCGTATTAA pLKO_005 4725 3UTR 100% 15.000 21.000 N Togaram1 n/a
2 TRCN0000429768 AGACTTTCGTGATCGTATTAA pLKO_005 4725 3UTR 100% 15.000 21.000 N TOGARAM1 n/a
3 TRCN0000428459 GGAGCTGCATTCACGATTATT pLKO_005 1291 3UTR 100% 15.000 21.000 N TOGARAM1 n/a
4 TRCN0000422175 ATCTTCCCGACGAGGTCTAAA pLKO_005 2935 3UTR 100% 13.200 18.480 N TOGARAM1 n/a
5 TRCN0000150257 GCTGATATTGTTACGGAACTT pLKO.1 5116 3UTR 100% 4.950 6.930 N TOGARAM1 n/a
6 TRCN0000148362 CCTCAACTAGTTGTCTCGTTA pLKO.1 776 3UTR 100% 0.000 0.000 N TOGARAM1 n/a
7 TRCN0000417597 GACCACTTATCTCCTATAATC pLKO_005 4909 3UTR 100% 13.200 10.560 N TOGARAM1 n/a
8 TRCN0000146735 CGCTAATATGATTGTGCAGTA pLKO.1 5863 3UTR 100% 4.050 3.240 N TOGARAM1 n/a
9 TRCN0000417607 ACGAACAGCCACAGCTAAATT pLKO_005 5244 3UTR 100% 15.000 10.500 N TOGARAM1 n/a
10 TRCN0000427886 GAACCACCATCAGGGATTTAT pLKO_005 3490 3UTR 100% 15.000 10.500 N TOGARAM1 n/a
11 TRCN0000424727 TATCAACCTTACCACTTATAT pLKO_005 5540 3UTR 100% 15.000 10.500 N TOGARAM1 n/a
12 TRCN0000420672 AGTTCTTGGGACCAGTTATAG pLKO_005 1524 3UTR 100% 13.200 9.240 N TOGARAM1 n/a
13 TRCN0000147246 GTCTCATTTCTCAGCCTTATT pLKO.1 5758 3UTR 100% 13.200 9.240 N TOGARAM1 n/a
14 TRCN0000412886 TACAATTTGTTGCCCTATATG pLKO_005 5680 3UTR 100% 13.200 9.240 N TOGARAM1 n/a
15 TRCN0000421005 TGTTATCAGAAACTAAGTTTG pLKO_005 5804 3UTR 100% 10.800 7.560 N TOGARAM1 n/a
16 TRCN0000149027 GCATGGATCAAGAGCTAGATA pLKO.1 4058 3UTR 100% 5.625 3.938 N TOGARAM1 n/a
17 TRCN0000147224 GCTGAGTACCTTAAACTCATA pLKO.1 4684 3UTR 100% 0.495 0.347 N TOGARAM1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_131765.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.